FastQCFastQC Report
Wed 8 May 2024
EGAF00007962141

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962141
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences461135
Total Bases14.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT45420.9849610200917301No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG31970.6932893838030079No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13410.2908042113480868No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7650.16589501989655958No Hit
TTCCTGGAAATGACCCCGTACCCGGTGCGCA7610.16502759495592398No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6870.1489802335541653No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6840.14832966484868856No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6670.14464310885098725No Hit
GTGGCAACCAACGAAATGAAGGTTATCAACG6490.14073969661812702No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6380.1383542780313791No Hit
TCCTACACCAACGGCAAACTGACTATCACCC5620.12187320415930258No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5410.11731922322096566No Hit
GCGCCGACCGGCTCCTGGTTCAGCGCGCCGC4650.10083814934888916No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)