FastQCFastQC Report
Wed 8 May 2024
EGAF00007962142

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962142
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences425032
Total Bases18.7 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA18220.4286736057520375No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA16580.3900882757062997No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11800.27762615520713735No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7660.18022172448192136No Hit
ACGGGCGATACGTACAGTGTAACCCTGTTCCACGTAAGAATCTT5970.14046001242259407No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5840.1374014191872612No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG5800.13646031357638955No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA5680.13363699674377458No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT4980.11716764855352069No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG4960.11669709574808486No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG4870.11457960812362364No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC4600.10822714525023998No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)