FastQCFastQC Report
Wed 8 May 2024
EGAF00007962143

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962143
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences425032
Total Bases13.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG64531.5182386267386927No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT41010.9648685275461613No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11660.27433228556908656No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7850.1846919761335617No Hit
TTCCTGGAAATGACCCCGTACCCGGTGCGCA6530.1536354909747972No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6470.1522238325584897No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6270.14751830450413145No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6210.14610664608782398No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5840.1374014191872612No Hit
GTGGCAACCAACGAAATGAAGGTTATCAACG5800.13646031357638955No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA4930.11599126653993111No Hit
TCCTACACCAACGGCAAACTGACTATCACCC4900.11528543733177736No Hit
GCGCCGACCGGCTCCTGGTTCAGCGCGCCGC4390.1032863407931638No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)