FastQCFastQC Report
Wed 8 May 2024
EGAF00007962144

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962144
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences464547
Total Bases20.4 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA20720.4460259134167264No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA18020.3879047760506472No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13300.2863004173958717No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8070.17371762168305896No Hit
ACGGGCGATACGTACAGTGTAACCCTGTTCCACGTAAGAATCTT7600.16360023851192668No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6630.1427196817544834No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6560.14121283745239988No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG6440.13862967579168523No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6080.13088019080954133No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5470.11774911903424197No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5160.11107595141072917No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG5140.11064542446727672No Hit
TACGGTAGAGTTGTCACCAGGTTGCGGCGCTTCACCGCCTGCCT4710.10138909518304928No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)