FastQCFastQC Report
Wed 8 May 2024
EGAF00007962145

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962145
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences464547
Total Bases14.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT46030.9908577603557874No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG32800.7060641872619993No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13020.2802730401875375No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8190.1763007833437736No Hit
TTCCTGGAAATGACCCCGTACCCGGTGCGCA8170.17587025640032117No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7340.158003388247045No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7010.15089969368007974No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6760.14551810688692426No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6470.1392754662068639No Hit
GTGGCAACCAACGAAATGAAGGTTATCAACG6220.1338938794137084No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5150.11086068793900294No Hit
GCGCCGACCGGCTCCTGGTTCAGCGCGCCGC5120.11021489752382428No Hit
TCCTACACCAACGGCAAACTGACTATCACCC5100.10978437058037184No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)