FastQCFastQC Report
Wed 8 May 2024
EGAF00007962146

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962146
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences434053
Total Bases19 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA18930.43612185608669907No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA16670.38405448182595214No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12840.2958164095168102No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7260.1672606801473553No Hit
ACGGGCGATACGTACAGTGTAACCCTGTTCCACGTAAGAATCTT6850.15781482906465338No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG6360.14652588508776576No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6320.1456043386406729No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6150.14168776624052823No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6040.13915351351102284No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5340.12302645068689769No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5190.11957065151029943No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG4530.10436513513326713No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)