FastQCFastQC Report
Wed 8 May 2024
EGAF00007962147

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962147
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences434053
Total Bases13.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG68721.5832167961055448No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT43601.0044856273312246No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12580.2898263576107065No Hit
TTCCTGGAAATGACCCCGTACCCGGTGCGCA7400.1704860927121803No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7400.1704860927121803No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6890.15873637551174624No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6560.1511336173232301No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6360.14652588508776576No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6170.14214853946407466No Hit
GTGGCAACCAACGAAATGAAGGTTATCAACG6070.1398446733463425No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5250.12095297118093873No Hit
TCCTACACCAACGGCAAACTGACTATCACCC4620.10643861463922608No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4490.10344358868617427No Hit
GCGCCGACCGGCTCCTGGTTCAGCGCGCCGC4460.10275242885085462No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)