FastQCFastQC Report
Wed 8 May 2024
EGAF00007962148

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962148
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences478364
Total Bases21 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA35360.7391860591516084No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA31770.6641386057479242No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT13490.28200282629963797No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC13430.28074855131238974No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12160.2541997307489694No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC10700.22367903939259642No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC9660.2019382729469609No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA8870.18542365228152619No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG8360.17476231488991648No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7990.16702761913521919No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG7530.15741151089964964No Hit
TTCCGGGTGGATGTGACCGTGATGGTCGTGATCGTGATCATGGT7100.14842254015770417No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6580.1375521569348864No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG6470.13525265279159804No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT6350.13274410281710164No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6050.12647272788086059No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5910.12354608624394812No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG5390.11267570302113035No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5090.10640432808488934No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)