FastQCFastQC Report
Wed 8 May 2024
EGAF00007962149

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962149
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences478364
Total Bases14.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT80681.6865817661864186No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG32890.687551738843224No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA29870.6244198978183977No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA15540.3248572216972849No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA14200.29684508031540835No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12330.257753509879506No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC9690.202565410440585No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8270.17288090240904416No Hit
CGTGGCGAACAGCAGTGGCTGGCAGGCAACC8260.17267185657783612No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA8160.17058139826575577No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6890.14403257770233546No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6630.13859738609092656No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6570.1373431111036784No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6160.12877223202414897No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5930.12396417790636419No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5400.1128847488523384No Hit
TCCTACACCAACGGCAAACTGACTATCACCC5370.11225761135871429No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5040.10535909892884918No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC4930.10305959478556079No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC4840.10117818230468847No Hit

[OK]Adapter Content

Adapter graph