FastQCFastQC Report
Wed 8 May 2024
EGAF00007962150

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962150
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences442445
Total Bases19.4 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA32460.7336505102329103No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA28790.6507023471843958No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC13170.29766411644385177No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT12270.2773226050695567No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11180.2526867746273548No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC9480.21426391980924184No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC8540.19301834126275583No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA8100.183073602368656No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG7600.17177276271626982No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7200.16273209099436087No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG7160.16182802382217No Hit
TTCCGGGTGGATGTGACCGTGATGGTCGTGATCGTGATCATGGT6620.14962311699759293No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG6350.14352066358530438No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT6290.14216456282701806No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5920.13380194148425228No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5580.12611737052062968No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5450.1231791522110093No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG4820.1089400942490027No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG4720.10667992631852546No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)