FastQCFastQC Report
Wed 8 May 2024
EGAF00007962151

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962151
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences442445
Total Bases13.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT72291.6338753969419928No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG68531.5488930827560488No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA27520.6219982144673349No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA14030.31710156064595596No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA12570.2841031088609884No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11140.2517827074551639No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8870.2004768954333307No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7380.16680039326921992No Hit
CGTGGCGAACAGCAGTGGCTGGCAGGCAACC7330.1656703093039813No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA7180.16228005740826545No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6620.14962311699759293No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5970.1349320254494909No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5820.13154177355377505No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5520.12476126976234334No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5310.12001491710834115No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC4940.11165229576557538No Hit
TCCTACACCAACGGCAAACTGACTATCACCC4820.1089400942490027No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4790.10826204386985953No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)