FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007962153

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962153
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences481557
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT80791.6776830157177656No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG34300.7122728981200565No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA29470.611973245119477No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA15250.3166810990183924No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA14500.30110661873879935No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12490.25936701158948994No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC10770.2236495368149565No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8650.1796256725579734No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA8620.1790026933467897No Hit
CGTGGCGAACAGCAGTGGCTGGCAGGCAACC8570.17796439466148348No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7170.14889203147290975No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6850.14224691988695004No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6710.13933968356809268No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6450.13394053040450038No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6150.1277107382926632No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5700.11836605012490733No Hit
TCCTACACCAACGGCAAACTGACTATCACCC5100.10590646590123289No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC4960.1029992295823755No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4870.10113029194882434No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)