FastQCFastQC Report
Wed 8 May 2024
EGAF00007962154

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962154
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences450849
Total Bases19.8 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA32570.7224148218139554No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA29260.6489977797444377No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC13320.295442598297878No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT12980.2879012707136979No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10850.24065707143633455No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC10460.23200672508977507No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC8640.19163844213916412No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA8510.1887549933569776No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG8060.1787738244955628No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8060.1787738244955628No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG7100.15748066425787793No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG6800.15082655168360137No Hit
TTCCGGGTGGATGTGACCGTGATGGTCGTGATCGTGATCATGGT6290.13951456030733128No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6180.13707471903009655No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT5900.13086421396077177No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5750.12753715767363352No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5660.12554092390135058No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG4860.10779662370327982No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG4590.10180792238643094No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)