FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007962155

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962155
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences450849
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT75281.6697386486384576No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG70611.5661562962322197No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA28800.638794807130547No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA14220.31540493602070757No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA13870.3076418046840516No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10760.23866083766405163No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC9200.20405945227781364No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8100.17966103950546636No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA7830.17367233818861746No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7450.16524379559453387No Hit
CGTGGCGAACAGCAGTGGCTGGCAGGCAACC7080.15703705675292615No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6260.13884914904990364No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5830.1293115876934406No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5810.12886798018848883No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5580.1237664938815435No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5180.1148943437825081No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4680.1038041561587139No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC4610.1022515298913827No Hit
TCCTACACCAACGGCAAACTGACTATCACCC4570.10136431488147916No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)