FastQCFastQC Report
Wed 8 May 2024
EGAF00007962165

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962165
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences495210
Total Bases15.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG34950.7057611922214818No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC26480.5347226429191656No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG24980.5044324629954968No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18100.36550150441226953No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA16250.3281436158397448No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG14790.29866117404737386No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG14730.29744956685042706No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG14370.2901799236687466No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC14200.2867470366107308No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT14000.28270834595424166No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC13720.27705417903515683No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG13650.27564063730538557No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG12390.25019688616950386No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG11940.2411098321924032No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11650.2352537307404939No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG11630.234849861674845No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG10570.21344480119545242No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC10360.20920417600613883No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC10320.20839643787484097No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG9610.19405908604430444No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG9490.19163587165041096No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC8950.1807314068778902No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG8780.1772985198198744No Hit
ACTGATGAGATTAGCTCCCGTATCCCGCAGC8280.16720179317865147No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG7510.15165283415116818No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC6930.1399406312473496No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC6820.13771935138628058No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT6650.13428646432826477No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG6580.13287292259849356No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG6450.1302477736717756No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6320.12762262474505767No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6260.1264110175481109No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGG6240.126007148482462No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG6190.1249974758183397No Hit
GCACTGACCCTGAGCCTGCCGAAACAGCAGG6180.12479554128551525No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6130.12378586862139296No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6050.12217039235879729No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC5950.1201510470305527No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5610.11328527291452112No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG5460.11025625492215424No Hit
GTTGCACGCGTCGCCGACACCCTGCCAACGG5370.10843884412673412No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG5210.10520789160154277No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)