FastQCFastQC Report
Wed 8 May 2024
EGAF00007962166

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962166
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences457008
Total Bases20.1 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT22900.50108532016945No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC18060.3951790778279593No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15140.33128522914259706No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA13460.2945243846934846No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG12010.2627962749010958No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA11710.2562318383923257No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG11430.25010503098414033No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG11180.2446346672268319No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT11170.24441585267653956No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG10720.23456919791338443No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG10540.2306305360081224No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG10430.2282235759549067No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT10010.2190333648426286No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG9570.20940552462976578No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG9330.2041539754227497No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG7860.17198823652977627No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC7740.16936246192626825No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT7680.16804957462451423No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG7370.1612663235654518No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG7120.1557959598081434No Hit
AGAGCTGGTGCCAGAGTTCAGTGCGTTGACCAGTTCGTCAGCGT7110.15557714525785107No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC6930.15163848335258903No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6860.15010678150054266No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG6480.14179182858943387No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCAGCG6160.1347897629800791No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA6060.13260161747715576No Hit
TACGTGACGGGTCTGCACGGTGTCAGACGGCGCCAGCGGGTTGG5500.12034800266078492No Hit
AATAGAGGATTCGGAACGGCTGTGGTAGTTGTGCACGTGACGAG5320.1164093407555229No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5310.11619052620523054No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5190.11356475160172251No Hit
CTGGACTACGTGACGCGTCTGAACGGTATCGCTCGGCGCCAGCG5150.11268949340055316No Hit
CTGCACTACGTGACGGGTCTGGACGGTATCAGACGGCGCCAGCG5000.10940727514616813No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA4950.10831320239470645No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC4920.10765675874382942No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC4920.10765675874382942No Hit
CAGGAAGTTCTCGATAGAAGATTCGGAGCGGGAGTGGTAGTTAT4860.10634387144207542No Hit
AACGCTGGATTCGGTACGGGAGTGGTAGTTTTTTACGTGACGAG4790.10481216959002906No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG4730.10349928228827504No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)