FastQCFastQC Report
Wed 8 May 2024
EGAF00007962168

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962168
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences498155
Total Bases21.9 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT23730.4763577601348977No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC19280.3870281338137728No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16980.3408577651534161No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA15450.3101444329576136No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG13550.27200369362949284No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG13310.26718591603015124No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA13020.2613644347642802No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG12850.2579518422980799No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT12770.25634591643163274No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG12550.251929620298903No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT11560.23205628770161896No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG11470.2302496211018659No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG11370.2282422137688069No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG10130.20335036283887545No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG9900.19873332597283977No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT8740.1754474009093555No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG8730.17524666017604962No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC8610.17283777137637885No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC8070.16199777177786032No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG8010.1607933273780249No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG7930.15918740151157773No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG7770.15597554977868333No Hit
AGAGCTGGTGCCAGAGTTCAGTGCGTTGACCAGTTCGTCAGCGT7750.15557406831207155No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG7590.15236221657917717No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCAGCG6920.13891258744768195No Hit
AATAGAGGATTCGGAACGGCTGTGGTAGTTGTGCACGTGACGAG6450.1294777729823047No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA6450.1294777729823047No Hit
TACGTGACGGGTCTGCACGGTGTCAGACGGCGCCAGCGGGTTGG5930.11903925485039796No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5860.11763406971725668No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC5840.11723258825064489No Hit
CTGCACTACGTGACGGGTCTGGACGGTATCAGACGGCGCCAGCG5800.11642962531742129No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5790.11622888458411539No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5590.11221406991799741No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5540.11121036625146791No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC5460.10960444038502072No Hit
CTGGACTACGTGACGCGTCTGAACGGTATCGCTCGGCGCCAGCG5260.10558962571890274No Hit
AACGCTGGATTCGGTACGGGAGTGGTAGTTTTTTACGTGACGAG5130.10297999618592607No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5040.10117332958617298No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)