FastQCFastQC Report
Wed 8 May 2024
EGAF00007962170

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962170
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences465342
Total Bases20.4 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT23270.5000623197562223No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC18810.404218832600539No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16090.3457671991782388No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA14490.3113838854004152No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG12760.2742069273781434No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA12390.26625578606702166No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG11970.257230166200343No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG11260.24197257071143374No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG11040.23724486506698297No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG11020.2368150736447602No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT10880.23380653368920062No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT10680.2295086194669727No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG10660.22907882804474988No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG9720.20887863120027853No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG9680.20801904835583293No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC8420.18094218875579682No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT8340.17922302306690563No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG8200.17621448311134605No Hit
AGAGCTGGTGCCAGAGTTCAGTGCGTTGACCAGTTCGTCAGCGT7590.1631058447335508No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG7370.15837813908910006No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG7330.15751855624465447No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC7160.1538653291557607No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG7100.1525759548890923No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG6890.14806314495575296No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA6200.13323534088906652No Hit
TACGTGACGGGTCTGCACGGTGTCAGACGGCGCCAGCGGGTTGG5830.12528419957794482No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5730.12313524246683086No Hit
AATAGAGGATTCGGAACGGCTGTGGTAGTTGTGCACGTGACGAG5730.12313524246683086No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCAGCG5710.12270545104460806No Hit
CTGGACTACGTGACGCGTCTGAACGGTATCGCTCGGCGCCAGCG5540.11905222395571428No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5300.11389472688904075No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC5220.11217556120014956No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5170.11110108264459258No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5160.11088618693348119No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC4980.10701806413347603No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG4890.10508400273347344No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC4880.10486910702236206No Hit
CTGCACTACGTGACGGGTCTGGACGGTATCAGACGGCGCCAGCG4850.10422441988902785No Hit
CATGGTATCACCTGGAACAACCTGGCTAGTGTGGCCGGTTTCAG4790.10293504562235947No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)