FastQCFastQC Report
Wed 8 May 2024
EGAF00007962173

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962173
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences523109
Total Bases16.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG33660.6434605407286054No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16840.3219214351119939No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG13310.2544402791769975No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG13250.25329329069085027No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG8430.16115188230368815No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7940.15178480966681895No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7820.14949083269452446No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7410.14165307803918495No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG7280.13916793631919927No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6740.12884503994387403No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA6620.12655106297157953No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5320.10169964577172252No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)