FastQCFastQC Report
Wed 8 May 2024
EGAF00007962174

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962174
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences483605
Total Bases21.2 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG11930.24668893001519834No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG11740.2427601038037241No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG8360.17286835330486658No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT8150.16852596643955295No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG7080.1464004714591454No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG6980.14433266818994842No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC6810.14081740263231357No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC6040.1248953174594969No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5600.11579698307503024No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)