FastQCFastQC Report
Wed 8 May 2024
EGAF00007962175

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962175
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences483605
Total Bases14.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG70421.4561470621685053No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16680.34490958530205434No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG12750.2636449168226135No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG11730.24255332347680442No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG8090.16728528447803476No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7100.14681403211298477No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7020.1451597894976272No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG6750.13957672067079538No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA6420.1327529698824454No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6310.1304783862863287No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5710.11807156667114692No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)