FastQCFastQC Report
Wed 8 May 2024
EGAF00007962176

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962176
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences523792
Total Bases23 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG13010.2483810367474112No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG12060.23024406634694689No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG8710.16628738125057274No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT8500.16227815621468064No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG7700.1470049179827107No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG7440.14204111555732046No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC6960.1328771726181385No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC6360.12142224394416103No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC6090.11626752604087119No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5650.1078672450132877No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)