FastQCFastQC Report
Wed 8 May 2024
EGAF00007962177

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962177
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences523792
Total Bases16.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG35240.672786144118276No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA17220.32875645294315303No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG14100.26919082383847026No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG12030.22967131991324802No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG8730.166669212206372No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG7700.1470049179827107No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7590.14490484772581483No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7570.14452301677001558No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7460.1424229465131197No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA6890.13154076427284112No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6670.1273406237590494No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5550.10595809023429147No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)