FastQCFastQC Report
Wed 8 May 2024
EGAF00007962181

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962181
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences500753
Total Bases15.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG32180.6426321959129551No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC16600.33150075985565736No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16070.32091669945062734No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14510.28976361599431255No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14200.28357293915363463No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA11830.2362442162103872No Hit
ACCGATTGCGACCTGGATCCGATGGAAGGCA11030.22026827597637957No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8990.17952962837966024No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8630.17234045527435682No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8600.17174135751558153No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG8360.16694857544537928No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7760.15496662026987357No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7560.15097263521137166No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG7080.14138707107096712No Hit
GCCAACTACATCGTCCGTCAGAGCCGCGGTG6330.12640962710158501No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6180.12341413830770859No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6110.12201624353723292No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5600.11183158163805308No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5500.10983458910880214No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)