FastQCFastQC Report
Wed 8 May 2024
EGAF00007962183

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962183
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences464685
Total Bases14.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG69021.4853072511486276No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15120.3253817101907744No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC14840.3193561229650193No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13670.29417777634311415No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13280.28578499413581243No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA11090.23865629404865663No Hit
ACCGATTGCGACCTGGATCCGATGGAAGGCA10340.2225163282653841No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8190.17624842635333612No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8180.17603322680955916No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8090.17409643091556645No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG7880.16957724049625017No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7450.16032366011384055No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6590.14181649934902138No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG6190.1332085175979427No Hit
GCCAACTACATCGTCCGTCAGAGCCGCGGTG6080.13084132261639606No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5810.12503093493441794No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5470.11771415044600105No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5190.11168856322024596No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4800.10329578101294426No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)