FastQCFastQC Report
Wed 8 May 2024
EGAF00007962185

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962185
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences506623
Total Bases15.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG34660.6841379092540212No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC17020.33595000621764115No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16130.31838270271977387No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14870.29351213821717526No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14720.2905513567287707No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA12820.2530481245423125No Hit
ACCGATTGCGACCTGGATCCGATGGAAGGCA12010.23705990450492773No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9490.18731877549973056No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9360.1847527648764466No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8430.1663959196483381No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG8270.16323775272737323No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7970.15731618975056402No Hit
GCCAACTACATCGTCCGTCAGAGCCGCGGTG7210.14231489687598076No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG7120.140538427982938No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6980.13777503192709373No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6890.13599856303405095No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5880.11606263434546003No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5580.11014107136865085No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5250.10362735209416074No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)