FastQCFastQC Report
Wed 8 May 2024
EGAF00007962187

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962187
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences473537
Total Bases14.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG74111.5650308212452249No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC15590.32922453789249834No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA14610.30852921735788336No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13570.2865668363823735No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13190.27854212025670644No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA11380.24031913028971338No Hit
ACCGATTGCGACCTGGATCCGATGGAAGGCA10210.2156114516922648No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8320.17569904780407866No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8220.17358728040258734No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8080.17063080604049946No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7850.1657737410170694No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG7620.16091667599363935No Hit
GCCAACTACATCGTCCGTCAGAGCCGCGGTG7040.14866842506498965No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG6580.13895429501812953No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6080.12839545801067287No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5640.11910368144411101No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5590.11804779774336537No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5040.10643307703516304No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)