FastQCFastQC Report
Wed 8 May 2024
EGAF00007962189

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962189
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences469289
Total Bases14.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30080.6409696370466813No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA19370.4127520568349141No Hit
ATGTCCAACATGGACATCGATGGTATTAACA13300.28340745255056055No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12490.26614729942530085No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8930.1902878609982335No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8760.18666535972503084No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7860.1674874118080756No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7380.15725917291903282No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6940.1478832872707436No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6940.1478832872707436No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG6230.13275401724736782No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4830.10292165382099303No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC4780.10185621227005108No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)