FastQCFastQC Report
Wed 8 May 2024
EGAF00007962191

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962191
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences435702
Total Bases13.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG65101.4941404905187492No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA18000.41312640290840985No Hit
ATGTCCAACATGGACATCGATGGTATTAACA11500.26394186852481744No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10890.249941473759588No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7740.17764435325061623No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7680.17626726524092154No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7500.17213600121183745No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6550.15033210772500472No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6420.14734841703733284No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6220.14275812367168386No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG5990.13747928630118753No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)