FastQCFastQC Report
Wed 8 May 2024
EGAF00007962193

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962193
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences473058
Total Bases14.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG33310.704141986817684No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA18650.39424341201290325No Hit
ATGTCCAACATGGACATCGATGGTATTAACA13560.28664561216595No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12210.2581078852910214No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8780.1856009199717582No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8470.17904781231899683No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7540.15938848936071265No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7450.15748597423571742No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7180.15177842886073167No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7040.14881896088851684No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG5960.12598877938857392No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC4860.10273581674974316No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4780.10104469219419183No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)