FastQCFastQC Report
Wed 8 May 2024
EGAF00007962195

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962195
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences442913
Total Bases13.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG67601.5262591073190446No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA17480.39465989934817897No Hit
ATGTCCAACATGGACATCGATGGTATTAACA12400.27996468832479515No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11830.2670953437808328No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8080.1824286033600278No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7850.17723570994755178No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7090.1600765838889353No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6700.1512712428851716No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6600.14901346314061678No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6300.14224012390695237No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG5940.1341121168265551No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)