FastQCFastQC Report
Wed 8 May 2024
EGAF00007962197

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962197
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences489256
Total Bases15.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG32560.6655002697974066No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12610.2577382801641676No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12270.2507889530225485No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12130.24792746537599947No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8040.16433114770181664No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7710.15758621253495103No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6920.14143924652942425No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6820.13939532678188923No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6750.13796458295861472No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5760.1177297774580179No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG5600.11445950586196182No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5070.10362673120002616No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5030.10280916330101214No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)