FastQCFastQC Report
Wed 8 May 2024
EGAF00007962199

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962199
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences456467
Total Bases14.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG67431.4772152203773767No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11830.2591644083800143No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11780.2580690389447649No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11280.24711534459227066No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7150.156637829240668No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7090.1553233859183687No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6870.1505037604032712No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6410.14042636159897648No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6340.1388928443896273No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5710.1250911895054845No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4950.10844157408969324No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG4900.1073462046544438No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)