FastQCFastQC Report
Wed 8 May 2024
EGAF00007962201

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962201
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences493140
Total Bases15.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG33360.6764813237620149No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12800.25956117938110884No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12330.2500304173257087No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11490.23299671492882346No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8080.16384799448432494No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7870.15958956888510362No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7300.1480309851157886No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6990.1417447378026524No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6790.13768909437482255No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5980.12126373849211176No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5700.11558583769315002No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG5250.10646063998053291No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5190.10524394695218396No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)