FastQCFastQC Report
Wed 8 May 2024
EGAF00007962203

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962203
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences463410
Total Bases14.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG70751.5267257935737253No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12180.26283420728944135No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11540.24902354286700765No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10490.22636542154895234No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7370.15903843248958807No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7100.15321205843637384No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6960.15019097559396646No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6880.14846464254116223No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6200.13379081159232645No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5490.11846960574868907No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5140.11091689864267064No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4910.10595369111585852No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)