FastQCFastQC Report
Wed 8 May 2024
EGAF00007962205

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962205
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences514975
Total Bases15.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG33380.6481868051847177No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC29130.5656585271129667No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA18870.3664255546385747No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG17700.34370600514588084No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17510.34001650565561437No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG16370.31787950871401527No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16320.31690858779552405No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT16110.31283071993786105No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT13590.2638963056459051No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG11830.2297198893150153No Hit
GGTCAGAAAGGTGGCGCGCAGAAGTCCCAGA11470.22272925870187874No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10180.19767949900480605No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTG10170.19748531482110784No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10000.19418418369823778No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG9890.19204815767755717No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9130.1772901597164911No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7030.13651148113986117No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6840.13282198164959463No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG6840.13282198164959463No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6390.12408369338317393No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6380.1238895091994757No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6050.11748143113743385No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5950.11553958930045148No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5910.11476285256565852No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG5840.11340356327977086No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5800.11262682654497791No Hit
ATGGTGGTTCAGCACAACCTGACTGCGATGA5360.10408272246225546No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5260.10214088062527307No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)