FastQCFastQC Report
Wed 8 May 2024
EGAF00007962207

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962207
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences477104
Total Bases14.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG69821.4634125892887084No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC26330.5518712901170395No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA16340.3424829806499212No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG15750.33011670411482613No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15580.32655353968945977No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15470.32424796270834033No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14940.3131392736174922No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT14400.3018209866192696No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT12880.2699621046983467No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG10950.22950970857506958No Hit
GGTCAGAAAGGTGGCGCGCAGAAGTCCCAGA9820.2058251450417519No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9280.1945068580435293No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG8990.188428518729669No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8770.18381736476743016No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTG8550.1792062108051913No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8310.17417586102820348No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6740.14126898957040815No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG6670.13980180421878666No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6300.13204668164593045No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6230.13057949629430898No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5850.12261477581407827No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5730.12009960092558436No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5710.11968040511083537No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5550.11632683859284348No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG5400.1131828699822261No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5170.10836211811261276No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5120.10731412857574031No Hit
ATGGTGGTTCAGCACAACCTGACTGCGATGA4820.10102619135450551No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)