FastQCFastQC Report
Wed 8 May 2024
EGAF00007962209

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962209
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences516035
Total Bases15.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG33720.6534440493377387No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC28700.556163826097067No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA19310.3741994244576434No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16980.329047448331993No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG16960.32865987772147237No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT16640.3224587479531427No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG16550.3207146802058No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15980.3096689178059628No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT13400.25967230904880484No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG12390.2400999932175143No Hit
GGTCAGAAAGGTGGCGCGCAGAAGTCCCAGA10880.2108384121232087No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10500.20347457052331724No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG10160.19688587014446693No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9830.190490955070877No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTG9530.18467739591306792No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9210.17847626614473824No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG7880.15270282054511808No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6940.13448700185064966No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6690.1296423692191421No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6630.1284796573875803No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6450.12499152189289486No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6420.12441016597711395No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6180.11975931865086671No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG5900.11433333010357825No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5750.11142655052467372No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5600.10851977094576917No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5550.10755084441946766No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)