FastQCFastQC Report
Wed 8 May 2024
EGAF00007962211

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962211
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences483054
Total Bases14.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG72531.5014884464262794No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC25520.5283053240424466No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA16060.33246800564740175No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG15860.3283276817912697No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG15790.32687856844162355No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15590.32273824458549144No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15280.3163207426084868No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT14850.307419046317803No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT13420.277815730746459No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG11840.24510717228301598No Hit
GGTCAGAAAGGTGGCGCGCAGAAGTCCCAGA9880.20453199849292208No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9870.2043249823001155No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9360.19376715646697884No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG8990.18610755733313458No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTG8520.17637779627122432No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7780.16105859800353584No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG6840.14159907587971532No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6610.13683770344516347No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6530.13518157390271068No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6450.13352544436025787No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG5820.12048342421344198No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5820.12048342421344198No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5730.11862027847818256No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5680.11758519751414956No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5400.11178874411556473No Hit
ATGGTGGTTCAGCACAACCTGACTGCGATGA5310.1099255983803053No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5250.1086835012234657No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)