FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007962223

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962223
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences428605
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT45001.049917756442412No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40980.9561251035335566No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG32610.7608404008352678No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA28520.665414542527502No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC27520.6420830368287818No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG26000.606619148166727No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG24710.5765215058153778No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG23920.5580896163133887No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC21990.5130598103148587No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG21900.5109599748019739No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC21870.5102600296310122No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG18240.42556666394465764No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG17670.4122677056963871No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC16700.38963614516862843No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC15150.3534723113356121No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG14850.34647285962599594No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA13870.32360798404125013No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13480.3145086968187492No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT13040.30424283431131227No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG12680.29584349225977297No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA12350.2881440953791953No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11540.2692455757632319No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11480.26784568542130865No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11440.2669124251933599No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG11030.25734650785688457No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC10750.2508136862612429No Hit
GTTGCACGCGTCGCCGACACCCTGCCAACGG10300.24031450869681875No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10250.23914793341188273No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC10000.23331505698720267No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG9900.23098190641733063No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG9690.2260822902205994No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC9420.2197827836819449No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG9030.210683496459444No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGG8940.2085836609465592No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA8800.20531725014873836No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT8390.19575133281226303No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC8310.19388481235636543No Hit
GCACTGACCCTGAGCCTGCCGAAACAGCAGG8220.1917849768434806No Hit
GACTCCGTTTCTCGTGCGCTGACTCAGGCAC7850.1831523197349541No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7310.17055330665764515No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7160.1670535808028371No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA7100.1656536904609139No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC7090.1654203754039267No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC7050.1644871151759779No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA7000.16332053989104187No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6940.16192064954911864No Hit
GGTGGTGATAACCATGGCCGTGGCCGTGGCC6030.1406889793632832No Hit
CGTGACACCACTCACATTTCCCAGAGCGCAC6020.140455664306296No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT5810.13555604810956476No Hit
GGCCCGGCTCACTCCAAAGAAGTTCCGGCAC5600.1306564319128335No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5580.1301898017988591No Hit
GAAGCCGTGAACCGTGCGGTGGCTCGTGTCG5330.12435692537417903No Hit
GGTCCAGCTCACTCTAAAGAAGTGCCGGCGC5320.12412361031719182No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5320.12412361031719182No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT5250.1224904049182814No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5200.12132382963334538No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCTG5170.12062388446238377No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5080.11852404894949896No Hit
CTGGAAGAGGTCATCGTAGAAAAAACCAAAC4680.10919144667001085No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4440.10359188530231798No Hit
AACTATATCGACTCCGTTCTGAACGAGGTTC4440.10359188530231798No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4400.10265862507436918No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)