FastQCFastQC Report
Wed 8 May 2024
EGAF00007962232

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962232
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences454016
Total Bases19.9 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13240.2916196786016352No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9020.19867141246123482No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7900.17400267831970678No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7330.1614480546941077No Hit
GCGGGTGTTGTTGCGAGCACGACCACGACGACCGCCCGGCGGCG4990.10990802086270088No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG4550.10021673244995771No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)