FastQCFastQC Report
Wed 8 May 2024
EGAF00007962233

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962233
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences454016
Total Bases14 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19750.435006695799267No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13120.2889765999436143No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8680.1911826895968424No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8160.17972934874541865No Hit
GCACCGCCGCGTCCGGTGTGCGAAATCAAAC4850.10682442909500987No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG4830.10638391598533972No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)