FastQCFastQC Report
Wed 8 May 2024
EGAF00007962234

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962234
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences460358
Total Bases20.2 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13920.3023733702900786No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9210.20006169111865113No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7660.16639224255905188No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7610.16530613131519384No Hit
GCGGGTGTTGTTGCGAGCACGACCACGACGACCGCCCGGCGGCG4860.10557001290300158No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG4670.10144279017634103No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)