FastQCFastQC Report
Wed 8 May 2024
EGAF00007962235

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962235
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences460358
Total Bases14.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19030.41337393941237044No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14150.30736948201182557No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9470.20570946958671293No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7750.16834724279799634No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG4990.1083939021370325No Hit
GCACCGCCGCGTCCGGTGTGCGAAATCAAAC4800.10426667941037192No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)