FastQCFastQC Report
Wed 8 May 2024
EGAF00007962237

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962237
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences435453
Total Bases13.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG38870.8926336481778745No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18590.42691174478072264No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12400.2847609271264637No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7500.17223443172971595No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5050.11597118403134207No Hit
GCACCGCCGCGTCCGGTGTGCGAAATCAAAC4590.10540747221858615No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)