FastQCFastQC Report
Wed 8 May 2024
EGAF00007962238

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962238
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences439726
Total Bases19.3 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5590.12712461851243728No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5490.12485047506856542No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG4930.11211527178288298No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA4660.10597508448442892No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)