FastQCFastQC Report
Wed 8 May 2024
EGAF00007962239

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962239
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences439726
Total Bases13.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8900.202398766504596No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7880.179202503377103No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA6630.15077571032870468No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5580.1268972041680501No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5120.11643614432623951No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG4870.11075078571655987No Hit
ATGAACCCGTCCACCCACGTTTCTAGCAACG4480.10188162628545958No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)