FastQCFastQC Report
Wed 8 May 2024
EGAF00007962240

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962240
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences415965
Total Bases18.3 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5200.12501051771182672No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG4790.11515391919993269No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA4740.11395189499116512No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG4720.11347108530765809No Hit
ACCAGAGTAACGGCTCACTGCCTGGCGCTGCGGGCTGCACAGGG4220.10145084321998245No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)