FastQCFastQC Report
Wed 8 May 2024
EGAF00007962241

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962241
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences415965
Total Bases12.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39290.9445506232495522No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6840.16443691175940284No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA5930.14256007115983316No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5120.12308727897779861No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT4800.11539432404168619No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG4470.10746096426382026No Hit
ATGAACCCGTCCACCCACGTTTCTAGCAACG4390.10553772552979217No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)