FastQCFastQC Report
Wed 8 May 2024
EGAF00007962242

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962242
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences446174
Total Bases19.6 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5760.12909761662490418No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5670.12708046636514006No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG4940.11071913648038657No Hit
ACCAGAGTAACGGCTCACTGCCTGGCGCTGCGGGCTGCACAGGG4750.10646070815421786No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA4580.10265053544133006No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)